AMOS - A Modular Open Source whole genome assembler Tool name | AMOS - A Modular Open Source whole genome assembler |
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URL | http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS |
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Important features | 1. AMOS is a modular, open-source framework for genome assembly research and development, which provides integration between software modules through a centralized data store and a well defined API.
2. It has a comparative assembler, a program that can assemble a set of shotgun reads from an organism by mapping them to the finished sequence of a related organism, comparative assembler for short reads (Solexa, 454). |
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Citations | Treangen TJ, Sommer DD, Angly FE, Koren S, Pop M. Next Generation Sequence Assembly with AMOS. Curr Protoc Bioinformatics. 2011 Mar;Chapter 11:Unit11.8. PubMed PMID: 21400694. |
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Year of publication | 2011 |
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Rank by usage frequency | 98 |
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Comments | |
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Function | Reference assembler |
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Category | Free, Downloadable |
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License | Artistic |
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Status | |
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Input file format | AMOS message format |
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Output file format | |
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Operating system | Debian, Ubuntu, Fedora, RedHat, CentOS, Cygwin, Mac OS X |
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Operating language | C, Perl |
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Platform | Roche 454, Illumina/Solexa |
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Maintained by | |
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Downloadable file format | |
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Submission file format | |
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